Get in touch with EOSC-Life

    News 2022-01-19

    FAIR metadata packaging method RO-Crate published in Data Science


    EOSC-Life is a significant contributor to RO-Crate development.

    An EOSC-Life article about the FAIR metadata packaging method RO-Crate has been published in the journal Data Science:

    Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José M. Fernández, Daniel Garijo, Björn Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole Goble (2022):
    Packaging research artefacts with RO-Crate.
    Data Science https://doi.org/10.3233/DS-210053

    EOSC-Life is a significant contributor to RO-Crate development, particularly for its specialization profiles to support the workflow life cycle from deposition and archiving in WorkflowHub (a European-wide repository of computational workflows in of life sciences), execution (WfExS), monitoring (Life Monitor), reporting (OpenEBench) and provenance (Common Provenance Model).

    Summary:

    An increasing number of researchers support reproducibility by including pointers to and descriptions of datasets, software and methods in their publications. However, scientific articles may be ambiguous, incomplete and difficult to process by automated systems. In this paper we introduce RO-Crate, an open, community-driven, and lightweight approach to packaging research artefacts along with their metadata in a machine readable manner. RO-Crate is based on Schema.org annotations in JSON-LD, aiming to establish best practices to formally describe metadata in an accessible and practical way for their use in a wide variety of situations.

    An RO-Crate is a structured archive of all the items that contributed to a research outcome, including their identifiers, provenance, relations and annotations. As a general purpose packaging approach for data and their metadata, RO-Crate is used across multiple areas, including bioinformatics, digital humanities and regulatory sciences. By applying “just enough” Linked Data standards, RO-Crate simplifies the process of making research outputs FAIR while also enhancing research reproducibility.

    More News & Events

    News | 2023-12-20
    A slide describing a new publication in the EMBO Journal from the EOSC-Life consortium with a QR code link to the article.
    Critical paper released: 12 key recommendations for sustainably sharing life science data
    Searching for ways to ensure the sustainability of your data? Search no further!
    more
    News | 2023-11-02
    Green background with yellow lines, heart outlines, and dots, plus the EOSC-Life logo.
    Final EOSC-Life Achievements Brochure is out!
    This brochure gives a comprehensive overview of the most important project outcomes
    more
    News | 2023-10-06
    A woman stands in a laboratory setting considering things that support translational research. She is surrounded by images of a person lying on a hospital bed, two computer monitors, a laboratory setup, a chemistry experiment, and a pile of journals.
    Success Story: FoRR Reuse
    The ForRR project funded in the 3rd Training Open Call resulted in two e-learning courses for biomedical stude...
    more