The goal of this science demonstrator is to extend the reporting capabilities developed during the EOSC Pilot that allowed sharing the image processing workflow performed during the acquisition phase of any structural study performed at the electron microscope (cryoEM images). Our previous project devised a mechanism to store and inspect the image processing steps that a particular set of cryoEM movies had undergone at the acquisition site. This mechanism was particularized to the Scipion workflow engine that is used in many cryoEM facilities. In this new project, we will extend this reporting mechanism to all the image processing steps and will incorporate FAIR principles in cryoEM data and their associated processing.
EMDB is a public database that preserves the last product of the acquisition and data analysis. EMPIAR is another public database that preserves some of the original data associated to the EMDB entries. Our goal here is to provide within Instruct an open science technology that allows preserving the original data and its full processing for all structural studies performed by electron microscopy. This technology has to be complemented with an open science policy and hardware support that are the object of other European projects.
The following workflow is a possible vision of how data acquisition and its FAIRification would work:
Steps 4 and 5 will require FAIRification guidelines to guarantee that raw data and workflows are findable by search engines.
With this workflow the preservation of the raw data of Instruct projects, their findability and reusability are guaranteed, and the process followed to its final structure is open facilitating its interpretability by understanding the limitations of this final result and the choices undertaken in the intermediate steps.
UNITOLink to presentation
Sci Life Lab
University of Dundee